Я когда запускал autogen.sh он писал следующее:
I am going to run ./configure with no arguments - if you wish
to pass any to it, please specify them on the ./autogen.sh command line.
+ aclocal
+ glib-gettextize --force --copy
Copying file mkinstalldirs
Copying file po/Makefile.in.in
Please add the files
codeset.m4 gettext.m4 glibc21.m4 iconv.m4 isc-posix.m4 lcmessage.m4
progtest.m4
from the /usr/share/aclocal directory to your autoconf macro directory
or directly to your aclocal.m4 file.
You will also need config.guess and config.sub, which you can get from
ftp://ftp.gnu.org/pub/gnu/config/.
+ libtoolize --force --copy
./autogen.sh: line 40: libtoolize: command not found
+ exit 1
В общем, не знаю, где здесь грабли.